Other Sites to Visit

Departments and Institutions

• Physiology Department Home Page
• Intercampus Program in Molecular Biophysics
• The Johns Hopkins Medical Institutions Home Page
• The Biomedical Engineering Department
• Centre for Protein Engineering, Cambridge, UK
• Center for Advanced Research in Biotechnology, Rockville, MD

Structural and Computational Labs

• NIH Molecular Graphics and Simulation Lab-- Bernard Brooks
• The Karplus Lab, Harvard University
• The Moult Group, Center for Advanced Research in Biotechnology
• The Honig Lab, Columbia University
• The Jorgensen Lab, Yale University
• The NIH Molecular Modeling Home Page
• The Kollman Lab, University of California- San Francisco
• The Wilson Group, University of California- San Diego
• Tim Hubbard, Centre for Protein Engineering, Cambridge

Biophysical Software Related Sites

• NCSA Biology Workbench
• GRAP: G Protein-Coupled Receptors Database
• CHARMm Home Page
• NAMD Page
• VMD: a free molecular graphics program
• BIOSYM/MSI
• SCARECROW: molecular graphics for displaying MD trajectories
• EGO: a program for efficient parallel MD
• DelPhi: Poisson-Boltzmann calculations
• GRASP:Graphical Representation and Analysis of Structural Properties
• PMD: Scalable Parallel Molecular Dynamics Simulation
• The Monte Carlo Home Page
• The Molecular Modelling Toolkit, in Python

3D Viewer Sites

The VRML Repository - many related sites and software packages.

Documentation and ftp site for Rasmol, an excellent multi-platform PDB viewer.

Supercomputing Sites

• LoBoS -- a Beowulf Machine
• Pittsburgh Supercomputing Center Home Page
• Cornell Theory Center Home Page
• National Consortium for High Performance Computing
• National Center for Supercomputing Applications
• Concurrent Supercomputing Consortium
• IBM High-Performance Computing Solutions
• Intel Paragon(tm) Supercomputers

Structure and Structural Prediction Sites

• PDB WWW Server
• Predict Protein
• Protein Motifs
• Protein Structure Prediction Asilomar Conference
• Other Computational Biology Servers
• Other Computational Chemistry URLS